#include <BoxLibParticle.h>

Inheritance diagram for BoxLibParticle< PLayout >:

Collaboration diagram for BoxLibParticle< PLayout >:

Public Types
typedef AmrParticleBase< PLayout >::ParticlePos_t	ParticlePos_t
typedef AmrParticleBase< PLayout >::ParticleIndex_t	ParticleIndex_t
typedef AmrParticleBase< PLayout >::SingleParticlePos_t	SingleParticlePos_t
typedef AmrParticleBase< PLayout >::AmrField_t	AmrField_t
typedef AmrParticleBase< PLayout >::AmrScalarFieldContainer_t	AmrScalarFieldContainer_t
typedef AmrParticleBase< PLayout >::AmrVectorFieldContainer_t	AmrVectorFieldContainer_t
typedef AmrParticleBase< PLayout >::AmrVectorField_t	AmrVectorField_t
typedef AmrParticleBase< PLayout >::ParticleLevelCounter_t	ParticleLevelCounter_t
typedef PLayout::AmrProcMap_t	AmrProcMap_t
typedef PLayout::AmrGrid_t	AmrGrid_t
typedef PLayout::AmrGeometry_t	AmrGeometry_t
typedef PLayout::AmrIntVect_t	AmrIntVect_t
typedef PLayout::AmrBox_t	AmrBox_t
typedef PLayout::AmrReal_t	AmrReal_t
typedef amrex::FArrayBox	FArrayBox_t
typedef long	SortListIndex_t
typedef std::vector< SortListIndex_t >	SortList_t
typedef std::vector< ParticleAttribBase * >	attrib_container_t
enum	{ Dim = PLayout::Dimension }
typedef PLayout	Layout_t
typedef PLayout::Position_t	Position_t
typedef PLayout::Index_t	Index_t
typedef PLayout::pair_iterator	pair_iterator
typedef PLayout::pair_t	pair_t
typedef PLayout::UpdateFlags	UpdateFlags
typedef attrib_container_t::iterator	attrib_iterator
enum	DsMode { INPUT , OUTPUT , BOTH , DEFAULT }
typedef std::vector< DataSourceObject * >	container_t

Public Member Functions
	BoxLibParticle ()
	BoxLibParticle (PLayout *layout)
template<class FT, unsigned Dim, class PT>
void	scatter (ParticleAttrib< FT > &attrib, AmrScalarFieldContainer_t &f, ParticleAttrib< Vektor< PT, Dim > > &pp, int lbase, int lfine, const ParticleAttrib< int > &pbin, int bin=-1)
template<class FT, unsigned Dim, class PT>
void	scatter (ParticleAttrib< FT > &attrib, AmrField_t &f, ParticleAttrib< Vektor< PT, Dim > > &pp, const ParticleAttrib< int > &pbin, int bin=-1, int level=0)
template<class FT, unsigned Dim, class PT>
void	gather (ParticleAttrib< FT > &attrib, AmrVectorFieldContainer_t &f, ParticleAttrib< Vektor< PT, Dim > > &pp, int lbase, int lfine)
void	initializeAmr ()
const ParticleLevelCounter_t &	getLocalNumPerLevel () const
ParticleLevelCounter_t &	getLocalNumPerLevel ()
void	setLocalNumPerLevel (const ParticleLevelCounter_t &LocalNumPerLevel)
void	createWithID (unsigned id)
void	create (size_t M)
void	destroy (size_t M, size_t I, bool doNow=false)
void	performDestroy (bool updateLocalNum=false)
void	update ()
void	update (int lev_min, int lev_max, bool isRegrid=false)
void	update (const ParticleAttrib< char > &canSwap)
void	sort ()
void	sort (SortList_t &sortlist)
PLayout &	getAmrLayout ()
const PLayout &	getAmrLayout () const
void	setForbidTransform (bool forbidTransform)
bool	isForbidTransform () const
const double &	domainMapping (bool inverse=false)
const double &	getScalingFactor () const
void	setLorentzFactor (const Vector_t &lorentzFactor)
void	initialize (PLayout *)
size_t	getTotalNum () const
size_t	getLocalNum () const
size_t	getDestroyNum () const
size_t	getGhostNum () const
void	setTotalNum (size_t n)
void	setLocalNum (size_t n)
PLayout &	getLayout ()
const PLayout &	getLayout () const
ParticleBConds< Position_t, PLayout::Dimension > &	getBConds ()
void	setBConds (const ParticleBConds< Position_t, PLayout::Dimension > &bc)
virtual void	setBConds (const ParticleBConds< Position_t, Dim > &bc)=0
bool	singleInitNode () const
bool	getUpdateFlag (UpdateFlags f) const
void	setUpdateFlag (UpdateFlags f, bool val)
void	addAttribute (ParticleAttribBase &pa)
ParticleAttribBase &	getAttribute (attrib_container_t::size_type N)
attrib_container_t::size_type	numAttributes () const
attrib_iterator	begin ()
attrib_iterator	end ()
void	resetID ()
void	globalCreate (size_t np)
size_t	putMessage (Message &, size_t, size_t)
size_t	putMessage (Message &, const std::vector< size_t > &)
size_t	putMessage (Message &, size_t)
Format *	getFormat ()
size_t	writeMsgBuffer (MsgBuffer *&, const std::vector< size_t > &)
template<class O>
size_t	writeMsgBufferWithOffsets (MsgBuffer *&, const std::vector< size_t > &, const std::vector< O > &)
size_t	readMsgBuffer (MsgBuffer *)
size_t	readGhostMsgBuffer (MsgBuffer *, int)
size_t	getMessage (Message &)
size_t	getSingleMessage (Message &)
size_t	getMessageAndCreate (Message &)
size_t	ghostPutMessage (Message &, size_t, size_t)
size_t	ghostPutMessage (Message &, const std::vector< size_t > &)
size_t	ghostGetMessage (Message &, int)
size_t	ghostGetSingleMessage (Message &, int)
void	ghostDestroy (size_t, size_t)
void	printDebug (Inform &)
bool	connected (DataConnect *=0) const
DataSourceObject *	findDataSourceObject (DataConnect *) const
DataConnect *	connect (const char , DataConnect =0, int=DataSource::DEFAULT)
bool	connect (DataSourceObject *)
bool	disconnect (DataConnect *=0)
bool	updateConnection (DataConnect *=0)
void	interact (DataConnect *=0)
void	interact (const char , DataConnect =0)

Public Attributes
ParticleIndex_t	Level
ParticleIndex_t	Grid
ParticlePos_t	R
ParticleIndex_t	ID
ParticlePos_t *	R_p
ParticleIndex_t *	ID_p

Protected Member Functions
virtual DataSourceObject *	createDataSourceObject (const char nm, DataConnect dc, int tm)

Protected Attributes
IpplTimings::TimerRef	updateParticlesTimer_m
IpplTimings::TimerRef	sortParticlesTimer_m
IpplTimings::TimerRef	domainMappingTimer_m
bool	forbidTransform_m
	To avoid multiple transformations during regrid.
double	scale_m
Vector_t	lorentzFactor_m
std::vector< std::pair< size_t, size_t > >	DestroyList

Private Member Functions
template<class AType>
void	AssignDensityFort (ParticleAttrib< AType > &pa, AmrScalarFieldContainer_t &mf_to_be_filled, int lev_min, int ncomp, int finest_level, const ParticleAttrib< int > &pbin, int bin=-1) const
template<class AType>
void	InterpolateFort (ParticleAttrib< AType > &pa, AmrVectorFieldContainer_t &mesh_data, int lev_min, int lev_max)
template<class AType>
void	InterpolateSingleLevelFort (ParticleAttrib< AType > &pa, AmrVectorField_t &mesh_data, int lev)
template<class AType>
void	InterpolateMultiLevelFort (ParticleAttrib< AType > &pa, AmrVectorFieldContainer_t &mesh_data, int lev)
template<class AType>
void	AssignCellDensitySingleLevelFort (ParticleAttrib< AType > &pa, AmrField_t &mf, int level, const ParticleAttrib< int > &pbin, int bin=-1, int ncomp=1, int particle_lvl_offset=0) const
void	getLocalBounds_m (Vector_t &rmin, Vector_t &rmax)
void	getGlobalBounds_m (Vector_t &rmin, Vector_t &rmax)
void	setup ()
unsigned	getNextID ()

Private Attributes
IpplTimings::TimerRef	AssignDensityTimer_m
ParticleLevelCounter_t	LocalNumPerLevel_m
PLayout *	Layout
attrib_container_t	AttribList
size_t	TotalNum
size_t	LocalNum
size_t	DestroyNum
size_t	GhostNum
unsigned	NextID
container_t	ConnectionList

Detailed Description

template<class PLayout>
class BoxLibParticle< PLayout >

Definition at line 38 of file BoxLibParticle.h.

Member Typedef Documentation

◆ AmrBox_t

template<class PLayout>

typedef PLayout::AmrBox_t BoxLibParticle< PLayout >::AmrBox_t

Definition at line 55 of file BoxLibParticle.h.

◆ AmrField_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::AmrField_t BoxLibParticle< PLayout >::AmrField_t

Definition at line 44 of file BoxLibParticle.h.

◆ AmrGeometry_t

template<class PLayout>

typedef PLayout::AmrGeometry_t BoxLibParticle< PLayout >::AmrGeometry_t

Definition at line 53 of file BoxLibParticle.h.

◆ AmrGrid_t

template<class PLayout>

typedef PLayout::AmrGrid_t BoxLibParticle< PLayout >::AmrGrid_t

Definition at line 52 of file BoxLibParticle.h.

◆ AmrIntVect_t

template<class PLayout>

typedef PLayout::AmrIntVect_t BoxLibParticle< PLayout >::AmrIntVect_t

Definition at line 54 of file BoxLibParticle.h.

◆ AmrProcMap_t

template<class PLayout>

typedef PLayout::AmrProcMap_t BoxLibParticle< PLayout >::AmrProcMap_t

Definition at line 51 of file BoxLibParticle.h.

◆ AmrReal_t

template<class PLayout>

typedef PLayout::AmrReal_t BoxLibParticle< PLayout >::AmrReal_t

Definition at line 56 of file BoxLibParticle.h.

◆ AmrScalarFieldContainer_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::AmrScalarFieldContainer_t BoxLibParticle< PLayout >::AmrScalarFieldContainer_t

Definition at line 46 of file BoxLibParticle.h.

◆ AmrVectorField_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::AmrVectorField_t BoxLibParticle< PLayout >::AmrVectorField_t

Definition at line 48 of file BoxLibParticle.h.

◆ AmrVectorFieldContainer_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::AmrVectorFieldContainer_t BoxLibParticle< PLayout >::AmrVectorFieldContainer_t

Definition at line 47 of file BoxLibParticle.h.

◆ attrib_container_t

template<class PLayout>

typedef std::vector<ParticleAttribBase *> AmrParticleBase< PLayout >::attrib_container_t

inherited

Definition at line 59 of file AmrParticleBase.h.

◆ attrib_iterator

template<class PLayout>

typedef attrib_container_t::iterator IpplParticleBase< PLayout >::attrib_iterator

inherited

Definition at line 143 of file IpplParticleBase.h.

◆ container_t

typedef std::vector<DataSourceObject *> DataSource::container_t

inherited

Definition at line 67 of file DataSource.h.

◆ FArrayBox_t

template<class PLayout>

typedef amrex::FArrayBox BoxLibParticle< PLayout >::FArrayBox_t

Definition at line 58 of file BoxLibParticle.h.

◆ Index_t

template<class PLayout>

typedef PLayout::Index_t IpplParticleBase< PLayout >::Index_t

inherited

Definition at line 134 of file IpplParticleBase.h.

◆ Layout_t

template<class PLayout>

typedef PLayout IpplParticleBase< PLayout >::Layout_t

inherited

Definition at line 132 of file IpplParticleBase.h.

◆ pair_iterator

template<class PLayout>

typedef PLayout::pair_iterator IpplParticleBase< PLayout >::pair_iterator

inherited

Definition at line 139 of file IpplParticleBase.h.

◆ pair_t

template<class PLayout>

typedef PLayout::pair_t IpplParticleBase< PLayout >::pair_t

inherited

Definition at line 140 of file IpplParticleBase.h.

◆ ParticleIndex_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::ParticleIndex_t BoxLibParticle< PLayout >::ParticleIndex_t

Definition at line 42 of file BoxLibParticle.h.

◆ ParticleLevelCounter_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::ParticleLevelCounter_t BoxLibParticle< PLayout >::ParticleLevelCounter_t

Definition at line 49 of file BoxLibParticle.h.

◆ ParticlePos_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::ParticlePos_t BoxLibParticle< PLayout >::ParticlePos_t

Definition at line 41 of file BoxLibParticle.h.

◆ Position_t

template<class PLayout>

typedef PLayout::Position_t IpplParticleBase< PLayout >::Position_t

inherited

Definition at line 133 of file IpplParticleBase.h.

◆ SingleParticlePos_t

template<class PLayout>

typedef AmrParticleBase<PLayout>::SingleParticlePos_t BoxLibParticle< PLayout >::SingleParticlePos_t

Definition at line 43 of file BoxLibParticle.h.

◆ SortList_t

template<class PLayout>

typedef std::vector<SortListIndex_t> AmrParticleBase< PLayout >::SortList_t

inherited

Definition at line 58 of file AmrParticleBase.h.

◆ SortListIndex_t

template<class PLayout>

typedef long AmrParticleBase< PLayout >::SortListIndex_t

inherited

Definition at line 57 of file AmrParticleBase.h.

◆ UpdateFlags

template<class PLayout>

typedef PLayout::UpdateFlags IpplParticleBase< PLayout >::UpdateFlags

inherited

Definition at line 141 of file IpplParticleBase.h.

Member Enumeration Documentation

◆ anonymous enum

template<class PLayout>

anonymous enum

inherited

Enumerator
Dim

Definition at line 129 of file IpplParticleBase.h.

◆ DsMode

enum DataSource::DsMode

inherited

Enumerator
INPUT
OUTPUT
BOTH
DEFAULT

Definition at line 64 of file DataSource.h.

Constructor & Destructor Documentation

◆ BoxLibParticle() [1/2]

template<class PLayout>

BoxLibParticle< PLayout >::BoxLibParticle ( )

Definition at line 37 of file BoxLibParticle.hpp.

References AmrParticleBase< PLayout >::AmrParticleBase(), AssignDensityTimer_m, and IpplTimings::getTimer().

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◆ BoxLibParticle() [2/2]

template<class PLayout>

BoxLibParticle< PLayout >::BoxLibParticle ( PLayout * layout )

Parameters

layout that does the particle-to-core management

Definition at line 44 of file BoxLibParticle.hpp.

References AmrParticleBase< PLayout >::AmrParticleBase(), AssignDensityTimer_m, and IpplTimings::getTimer().

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Member Function Documentation

◆ addAttribute()

template<class PLayout>

void IpplParticleBase< PLayout >::addAttribute ( ParticleAttribBase & pa )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 231 of file IpplParticleBase.h.

Referenced by GenArrayParticle< PLayout, T, N >::GenArrayParticle(), GenParticle< PLayout, T >::GenParticle(), ParticlePos_t< PLayout >::initializeAmr(), and setup().

◆ AssignCellDensitySingleLevelFort()

template<class PLayout>

template<class AType>

void BoxLibParticle< PLayout >::AssignCellDensitySingleLevelFort	(	ParticleAttrib< AType > &	pa,
		AmrField_t &	mf,
		int	level,
		const ParticleAttrib< int > &	pbin,
		int	bin = -1,
		int	ncomp = 1,
		int	particle_lvl_offset = 0 ) const

private

Single-level scatter (adjusted from AMReX).

Parameters

pa	is the attribute to scatter onto the grid
mf	where attribute is scatterd to
level	where we want to scatter
ncomp	is the number of the component in the MultiFab (ncomp = 1)
particle_lvl_offset	is zero

Definition at line 180 of file BoxLibParticle.hpp.

References AmrParticleLevelCounter< Key, T, Compare, Allocator >::begin(), AmrParticleLevelCounter< Key, T, Compare, Allocator >::end(), IpplParticleBase< PLayout >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), AmrParticleBase< PLayout >::Grid, and IpplParticleBase< PLayout >::R.

Referenced by AssignDensityFort(), and scatter().

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◆ AssignDensityFort()

template<class PLayout>

template<class AType>

void BoxLibParticle< PLayout >::AssignDensityFort	(	ParticleAttrib< AType > &	pa,
		AmrScalarFieldContainer_t &	mf_to_be_filled,
		int	lev_min,
		int	ncomp,
		int	finest_level,
		const ParticleAttrib< int > &	pbin,
		int	bin = -1 ) const

private

Multi-level scatter (adjusted from AMReX).

Parameters

pa	is the attribute to scatter onto the grid
mf_to_be_filled	is the MultiFab container to be filled (i.e. grid data)
lev_min	level we want to start
ncomp	is the number of components of MultiFab (equal to 1)
finest_level	level we want to end

Definition at line 118 of file BoxLibParticle.hpp.

References AssignCellDensitySingleLevelFort(), AssignDensityTimer_m, IpplParticleBase< PLayout >::getLayout(), IpplTimings::startTimer(), and IpplTimings::stopTimer().

Referenced by scatter().

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◆ begin()

template<class PLayout>

attrib_iterator IpplParticleBase< PLayout >::begin ( )

inlineinherited

Definition at line 242 of file IpplParticleBase.h.

◆ connect() [1/2]

DataConnect * DataSource::connect	(	const char *	nm,
		DataConnect *	dataconn = 0,
		int	tm = DataSource::DEFAULT )

inherited

Definition at line 83 of file DataSource.cpp.

Referenced by DataConnect::connect(), and DataConnect::connect().

◆ connect() [2/2]

bool DataSource::connect ( DataSourceObject * dso )

inherited

Definition at line 127 of file DataSource.cpp.

References DataConnect::checkin(), DataSourceObject::connected(), ConnectionList, DataSourceObject::getConnection(), and DataSourceObject::getSource().

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◆ connected()

bool DataSource::connected ( DataConnect * dataconn = 0 ) const

inherited

Definition at line 69 of file DataSource.cpp.

References ConnectionList, and findDataSourceObject().

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◆ create()

template<class PLayout>

void AmrParticleBase< PLayout >::create ( size_t M )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 135 of file AmrParticleBase.hpp.

◆ createDataSourceObject()

template<class PLayout>

virtual DataSourceObject * IpplParticleBase< PLayout >::createDataSourceObject	(	const char *	nm,
		DataConnect *	dc,
		int	tm )

inlineprotectedvirtualinherited

Implements DataSource.

Definition at line 346 of file IpplParticleBase.h.

◆ createWithID()

template<class PLayout>

void AmrParticleBase< PLayout >::createWithID ( unsigned id )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 152 of file AmrParticleBase.hpp.

◆ destroy()

template<class PLayout>

void AmrParticleBase< PLayout >::destroy	(	size_t	M,
		size_t	I,
		bool	doNow = false )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 95 of file AmrParticleBase.hpp.

◆ disconnect()

bool DataSource::disconnect ( DataConnect * dataconn = 0 )

inherited

Definition at line 143 of file DataSource.cpp.

References a, DataConnect::checkout(), and ConnectionList.

Referenced by DataConnect::checkout(), and ~DataSource().

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◆ domainMapping()

template<class PLayout>

const double & AmrParticleBase< PLayout >::domainMapping ( bool inverse = false )

inherited

Linear mapping to AMReX computation domain [-1, 1]^3 including the Lorentz transform. All dimensions are mapped by the same scaling factor. The potential and electric field need to be scaled afterwards appropriately.

Parameters

PData	is the particle data
inverse	is true if we want to do the inverse operation

Returns: scaling factor

Definition at line 265 of file AmrParticleBase.hpp.

References domainMappingTimer_m, getGlobalBounds_m(), IpplParticleBase< PLayout >::getLayout(), IpplParticleBase< PLayout >::getLocalNum(), IpplParticleBase< PLayout >::getTotalNum(), lorentzFactor_m, IpplInfo::myNode(), IpplParticleBase< PLayout >::R, scale_m, IpplTimings::startTimer(), and IpplTimings::stopTimer().

Referenced by AmrBoxLib::computeSelfFields_cycl(), AmrBoxLib::computeSelfFields_cycl(), and AmrBoxLib::initFineLevels().

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◆ end()

template<class PLayout>

attrib_iterator IpplParticleBase< PLayout >::end ( )

inlineinherited

Definition at line 243 of file IpplParticleBase.h.

◆ findDataSourceObject()

DataSourceObject * DataSource::findDataSourceObject ( DataConnect * dc ) const

inherited

Definition at line 55 of file DataSource.cpp.

References a, and ConnectionList.

Referenced by connected().

◆ gather()

template<class PLayout>

template<class FT, unsigned Dim, class PT>

void BoxLibParticle< PLayout >::gather	(	ParticleAttrib< FT > &	attrib,
		AmrVectorFieldContainer_t &	f,
		ParticleAttrib< Vektor< PT, Dim > > &	pp,
		int	lbase,
		int	lfine )

Multi-level gather. Gather the data from the given Field into the given attribute, using the given Position attribute.

Parameters

attrib	to gather from grid
f	vector field on grid
pp	particle position (not used for AMReX call)
lbase	base level to gather from
lfine	finest level to gather from

Definition at line 106 of file BoxLibParticle.hpp.

References InterpolateFort().

Referenced by AmrBoxLib::computeSelfFields_cycl(), and AmrBoxLib::computeSelfFields_cycl().

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◆ getAmrLayout() [1/2]

template<class PLayout>

PLayout & AmrParticleBase< PLayout >::getAmrLayout ( )

inlineinherited

Definition at line 125 of file AmrParticleBase.h.

Referenced by AmrYtWriter::writeBunch().

◆ getAmrLayout() [2/2]

template<class PLayout>

const PLayout & AmrParticleBase< PLayout >::getAmrLayout ( ) const

inlineinherited

Definition at line 126 of file AmrParticleBase.h.

◆ getAttribute()

template<class PLayout>

ParticleAttribBase & IpplParticleBase< PLayout >::getAttribute ( attrib_container_t::size_type N )

inlineinherited

Definition at line 235 of file IpplParticleBase.h.

Referenced by DiscParticle::read(), and DiscParticle::write().

◆ getBConds()

template<class PLayout>

ParticleBConds< Position_t, PLayout::Dimension > & IpplParticleBase< PLayout >::getBConds ( )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 207 of file IpplParticleBase.h.

◆ getDestroyNum()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getDestroyNum ( ) const

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 197 of file IpplParticleBase.h.

◆ getFormat()

template<class PLayout>

Format * IpplParticleBase< PLayout >::getFormat ( )

inherited

Definition at line 250 of file IpplParticleBase.hpp.

◆ getGhostNum()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getGhostNum ( ) const

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 198 of file IpplParticleBase.h.

◆ getGlobalBounds_m()

template<class PLayout>

void AmrParticleBase< PLayout >::getGlobalBounds_m	(	Vector_t &	rmin,
		Vector_t &	rmax )

privateinherited

Definition at line 370 of file AmrParticleBase.hpp.

References allreduce(), getLocalBounds_m(), and min().

Referenced by domainMapping().

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◆ getLayout() [1/2]

template<class PLayout>

PLayout & IpplParticleBase< PLayout >::getLayout ( )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 203 of file IpplParticleBase.h.

Referenced by BoxLibParticle< PLayout >::AssignCellDensitySingleLevelFort(), BoxLibParticle< PLayout >::AssignDensityFort(), AmrParticleBase< PLayout >::domainMapping(), ParticlePos_t< PLayout >::getAmrLayout(), ParticlePos_t< PLayout >::getAmrLayout(), IpplParticleBase< Layout_t >::getUpdateFlag(), BoxLibParticle< PLayout >::InterpolateMultiLevelFort(), BoxLibParticle< PLayout >::InterpolateSingleLevelFort(), operator<<(), BoxLibParticle< PLayout >::scatter(), IpplParticleBase< Layout_t >::setUpdateFlag(), AmrParticleBase< PLayout >::update(), and AmrParticleBase< PLayout >::update().

◆ getLayout() [2/2]

template<class PLayout>

const PLayout & IpplParticleBase< PLayout >::getLayout ( ) const

inlineinherited

Definition at line 204 of file IpplParticleBase.h.

◆ getLocalBounds_m()

template<class PLayout>

void AmrParticleBase< PLayout >::getLocalBounds_m	(	Vector_t &	rmin,
		Vector_t &	rmax )

privateinherited

Definition at line 349 of file AmrParticleBase.hpp.

References IpplParticleBase< PLayout >::getLocalNum(), max(), and IpplParticleBase< PLayout >::R.

Referenced by getGlobalBounds_m().

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◆ getLocalNum()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getLocalNum ( ) const

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 196 of file IpplParticleBase.h.

Referenced by AmrParticleBase< PLayout >::domainMapping(), AmrParticleBase< PLayout >::getLocalBounds_m(), operator<<(), printDebug(), DiscParticle::read(), resetID(), AmrParticleBase< PLayout >::sort(), and DiscParticle::write().

◆ getLocalNumPerLevel() [1/2]

template<class PLayout>

AmrParticleBase< PLayout >::ParticleLevelCounter_t & AmrParticleBase< PLayout >::getLocalNumPerLevel ( )

inherited

Definition at line 80 of file AmrParticleBase.hpp.

◆ getLocalNumPerLevel() [2/2]

template<class PLayout>

const AmrParticleBase< PLayout >::ParticleLevelCounter_t & AmrParticleBase< PLayout >::getLocalNumPerLevel ( ) const

inherited

Definition at line 72 of file AmrParticleBase.hpp.

References LocalNumPerLevel_m.

Referenced by BoxLibParticle< PLayout >::AssignCellDensitySingleLevelFort(), BoxLibParticle< PLayout >::InterpolateMultiLevelFort(), BoxLibParticle< PLayout >::InterpolateSingleLevelFort(), AmrBoxLib::postRegrid_m(), AmrBoxLib::tagForMaxNumParticles_m(), AmrBoxLib::tagForMinNumParticles_m(), AmrBoxLib::tagForMomenta_m(), AmrYtWriter::writeBunch(), and AmrYtWriter::writeParticles_m().

◆ getMessage()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getMessage ( Message & msg )

inherited

Definition at line 346 of file IpplParticleBase.hpp.

References AttribList, Message::get(), Layout, and PAssert.

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◆ getMessageAndCreate()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getMessageAndCreate ( Message & msg )

inherited

Definition at line 394 of file IpplParticleBase.hpp.

References ADDIPPLSTAT, getMessage(), Layout, LocalNum, and PAssert.

Referenced by DiscParticle::read().

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◆ getNextID()

template<class PLayout>

unsigned IpplParticleBase< PLayout >::getNextID ( )

privateinherited

Definition at line 86 of file IpplParticleBase.hpp.

References IpplInfo::Comm, and NextID.

Referenced by create().

◆ getScalingFactor()

template<class PLayout>

const double & AmrParticleBase< PLayout >::getScalingFactor ( ) const

inlineinherited

This function is used during the cell tagging routines.

Returns: the scaling factor of the particle domain mapping.

Definition at line 338 of file AmrParticleBase.hpp.

References scale_m.

Referenced by AmrBoxLib::tagForChargeDensity_m().

◆ getSingleMessage()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getSingleMessage ( Message & msg )

inherited

Definition at line 369 of file IpplParticleBase.hpp.

References AttribList, Layout, and PAssert.

◆ getTotalNum()

template<class PLayout>

size_t IpplParticleBase< PLayout >::getTotalNum ( ) const

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 195 of file IpplParticleBase.h.

Referenced by AmrParticleBase< PLayout >::domainMapping(), operator<<(), printDebug(), and DiscParticle::write().

◆ getUpdateFlag()

template<class PLayout>

bool IpplParticleBase< PLayout >::getUpdateFlag ( UpdateFlags f ) const

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 219 of file IpplParticleBase.h.

Referenced by destroy(), and performDestroy().

◆ ghostDestroy()

template<class PLayout>

void IpplParticleBase< PLayout >::ghostDestroy	(	size_t	M,
		size_t	I )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 603 of file IpplParticleBase.hpp.

References AttribList, GhostNum, Layout, and PAssert.

◆ ghostGetMessage()

template<class PLayout>

size_t IpplParticleBase< PLayout >::ghostGetMessage	(	Message &	msg,
		int	)

inherited

Definition at line 688 of file IpplParticleBase.hpp.

References AttribList, Message::get(), GhostNum, Layout, and PAssert.

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◆ ghostGetSingleMessage()

template<class PLayout>

size_t IpplParticleBase< PLayout >::ghostGetSingleMessage	(	Message &	msg,
		int	)

inherited

Definition at line 713 of file IpplParticleBase.hpp.

References AttribList, GhostNum, Layout, and PAssert.

◆ ghostPutMessage() [1/2]

template<class PLayout>

size_t IpplParticleBase< PLayout >::ghostPutMessage	(	Message &	msg,
		const std::vector< size_t > &	pl )

inherited

Definition at line 663 of file IpplParticleBase.hpp.

References AttribList, Layout, PAssert, and Message::put().

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◆ ghostPutMessage() [2/2]

template<class PLayout>

size_t IpplParticleBase< PLayout >::ghostPutMessage	(	Message &	msg,
		size_t	M,
		size_t	I )

inherited

Definition at line 628 of file IpplParticleBase.hpp.

References AttribList, GhostNum, Layout, PAssert, Message::put(), and R.

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◆ globalCreate()

template<class PLayout>

void IpplParticleBase< PLayout >::globalCreate ( size_t np )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 465 of file IpplParticleBase.hpp.

References create(), IpplInfo::getNodes(), Layout, IpplInfo::myNode(), and PAssert.

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◆ initialize()

template<class PLayout>

void IpplParticleBase< PLayout >::initialize ( PLayout * layout )

inherited

Definition at line 33 of file IpplParticleBase.hpp.

References Layout, PAssert, and setup().

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◆ initializeAmr()

template<class PLayout>

void AmrParticleBase< PLayout >::initializeAmr ( )

inlineinherited

Definition at line 75 of file AmrParticleBase.h.

◆ interact() [1/2]

void DataSource::interact	(	const char *	str,
		DataConnect *	dataconn = 0 )

inherited

Definition at line 208 of file DataSource.cpp.

References a, and ConnectionList.

◆ interact() [2/2]

void DataSource::interact ( DataConnect * dataconn = 0 )

inherited

Definition at line 195 of file DataSource.cpp.

References a, and ConnectionList.

◆ InterpolateFort()

template<class PLayout>

template<class AType>

void BoxLibParticle< PLayout >::InterpolateFort	(	ParticleAttrib< AType > &	pa,
		AmrVectorFieldContainer_t &	mesh_data,
		int	lev_min,
		int	lev_max )

private

Multi-level gather (adjusted from AMReX).

Parameters

pa	is the attribute to gather to.
mesh_data	where the information is
lev_min	level to start
lev_max	level to end

Definition at line 302 of file BoxLibParticle.hpp.

References InterpolateMultiLevelFort(), and InterpolateSingleLevelFort().

Referenced by gather().

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◆ InterpolateMultiLevelFort()

template<class PLayout>

template<class AType>

void BoxLibParticle< PLayout >::InterpolateMultiLevelFort	(	ParticleAttrib< AType > &	pa,
		AmrVectorFieldContainer_t &	mesh_data,
		int	lev )

private

Multi-level gather.

Parameters

pa	is the attribute to be updated
mesh_data	where the information is taken from
lev	for which we get the mesh data

Definition at line 409 of file BoxLibParticle.hpp.

References AmrParticleLevelCounter< Key, T, Compare, Allocator >::begin(), AmrParticleLevelCounter< Key, T, Compare, Allocator >::end(), IpplParticleBase< PLayout >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), AmrParticleBase< PLayout >::Grid, and IpplParticleBase< PLayout >::R.

Referenced by InterpolateFort().

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◆ InterpolateSingleLevelFort()

template<class PLayout>

template<class AType>

void BoxLibParticle< PLayout >::InterpolateSingleLevelFort	(	ParticleAttrib< AType > &	pa,
		AmrVectorField_t &	mesh_data,
		int	lev )

private

Single-level gather (adjusted from AMReX).

Parameters

pa	is the attribute to be updated
mesh_data	where the information is taken from
lev	for which we get the mesh data

Definition at line 317 of file BoxLibParticle.hpp.

References AmrParticleLevelCounter< Key, T, Compare, Allocator >::begin(), AmrParticleLevelCounter< Key, T, Compare, Allocator >::end(), IpplParticleBase< PLayout >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), AmrParticleBase< PLayout >::Grid, and IpplParticleBase< PLayout >::R.

Referenced by InterpolateFort().

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◆ isForbidTransform()

template<class PLayout>

bool AmrParticleBase< PLayout >::isForbidTransform ( ) const

inlineinherited

Returns: true if we are not mapping the particles onto \([-1, 1]^3\) during an update call.

Definition at line 259 of file AmrParticleBase.hpp.

References forbidTransform_m.

Referenced by AmrBoxLib::initFineLevels().

◆ numAttributes()

template<class PLayout>

attrib_container_t::size_type IpplParticleBase< PLayout >::numAttributes ( ) const

inlineinherited

Definition at line 239 of file IpplParticleBase.h.

Referenced by operator<<(), DiscParticle::read(), and DiscParticle::write().

◆ performDestroy()

template<class PLayout>

void AmrParticleBase< PLayout >::performDestroy ( bool updateLocalNum = false )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 110 of file AmrParticleBase.hpp.

References IpplParticleBase< PLayout >::DestroyList.

◆ printDebug()

template<class PLayout>

void IpplParticleBase< PLayout >::printDebug ( Inform & o )

inherited

Definition at line 763 of file IpplParticleBase.hpp.

References AttribList, endl(), getLocalNum(), getTotalNum(), and Layout.

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◆ putMessage() [1/3]

template<class PLayout>

size_t IpplParticleBase< PLayout >::putMessage	(	Message &	msg,
		const std::vector< size_t > &	putList )

inherited

Definition at line 209 of file IpplParticleBase.hpp.

References Layout, and PAssert.

◆ putMessage() [2/3]

template<class PLayout>

size_t IpplParticleBase< PLayout >::putMessage	(	Message &	msg,
		size_t	I )

inherited

Definition at line 232 of file IpplParticleBase.hpp.

References AttribList, Layout, and PAssert.

◆ putMessage() [3/3]

template<class PLayout>

size_t IpplParticleBase< PLayout >::putMessage	(	Message &	msg,
		size_t	M,
		size_t	I )

inherited

Definition at line 180 of file IpplParticleBase.hpp.

References Layout, PAssert, and Message::put().

Referenced by DiscParticle::write().

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◆ readGhostMsgBuffer()

template<class PLayout>

size_t IpplParticleBase< PLayout >::readGhostMsgBuffer	(	MsgBuffer *	msgbuf,
		int	node )

inherited

Definition at line 330 of file IpplParticleBase.hpp.

◆ readMsgBuffer()

template<class PLayout>

size_t IpplParticleBase< PLayout >::readMsgBuffer ( MsgBuffer * msgbuf )

inherited

Definition at line 314 of file IpplParticleBase.hpp.

References MsgBuffer::get().

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◆ resetID()

template<class PLayout>

void IpplParticleBase< PLayout >::resetID ( void )

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 96 of file IpplParticleBase.hpp.

References IpplInfo::Comm, COMM_ANY_NODE, Message::get(), getLocalNum(), IpplInfo::getNodes(), ID, IpplInfo::myNode(), P_LAYOUT_CYCLE, P_RESET_ID_TAG, PAssert, Message::put(), and sum().

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◆ scatter() [1/2]

template<class PLayout>

template<class FT, unsigned Dim, class PT>

void BoxLibParticle< PLayout >::scatter	(	ParticleAttrib< FT > &	attrib,
		AmrField_t &	f,
		ParticleAttrib< Vektor< PT, Dim > > &	pp,
		const ParticleAttrib< int > &	pbin,
		int	bin = -1,
		int	level = 0 )

Single-level scatter. Scatter the data from the given attribute onto the given field, using the given position attribute. It calls the AMReX methods.

Parameters

attrib	to scatter onto grid
f	field on grid
pp	particle position (not used for AMReX call)
pbin	the particle bin attribute
bin	to scatter (default: -1 --> scatter all particles)
level	for which we put particles onto the grid

Definition at line 85 of file BoxLibParticle.hpp.

References AssignCellDensitySingleLevelFort().

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◆ scatter() [2/2]

template<class PLayout>

template<class FT, unsigned Dim, class PT>

void BoxLibParticle< PLayout >::scatter	(	ParticleAttrib< FT > &	attrib,
		AmrScalarFieldContainer_t &	f,
		ParticleAttrib< Vektor< PT, Dim > > &	pp,
		int	lbase,
		int	lfine,
		const ParticleAttrib< int > &	pbin,
		int	bin = -1 )

Multi-level scatter. Scatter the data from the given attribute onto the given field, using the given position attribute. It calls the AMReX method.

Parameters

attrib	to scatter onto grid
f	field on grid
pp	particle position (not used for AMReX call)
lbase	base level we want to start
lfine	finest level we want to stop
pbin	the particle bin attribute
bin	to scatter (default: -1 --> scatter all particles)

Definition at line 52 of file BoxLibParticle.hpp.

References AssignDensityFort(), IpplParticleBase< PLayout >::getLayout(), and scatter().

Referenced by AmrBoxLib::computeSelfFields_cycl(), AmrBoxLib::solvePoisson_m(), and AmrBoxLib::tagForChargeDensity_m().

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◆ setBConds() [1/2]

virtual void AbstractParticle< PLayout::Position_t, Dim >::setBConds ( const ParticleBConds< Position_t, Dim > & bc )

pure virtualinherited

◆ setBConds() [2/2]

template<class PLayout>

void IpplParticleBase< PLayout >::setBConds ( const ParticleBConds< Position_t, PLayout::Dimension > & bc )

inlineinherited

Definition at line 210 of file IpplParticleBase.h.

◆ setForbidTransform()

template<class PLayout>

void AmrParticleBase< PLayout >::setForbidTransform ( bool forbidTransform )

inlineinherited

This method is used in the AmrPartBunch::boundp() function in order to avoid multpile particle mappings during the mesh regridding process.

Parameters

forbidTransform true if we don't want to map particles onto \([-1, 1]^3\)

Definition at line 253 of file AmrParticleBase.hpp.

References forbidTransform_m.

Referenced by AmrBoxLib::computeSelfFields_cycl(), AmrBoxLib::computeSelfFields_cycl(), and AmrBoxLib::initFineLevels().

◆ setLocalNum()

template<class PLayout>

void IpplParticleBase< PLayout >::setLocalNum ( size_t n )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 200 of file IpplParticleBase.h.

◆ setLocalNumPerLevel()

template<class PLayout>

void AmrParticleBase< PLayout >::setLocalNumPerLevel ( const ParticleLevelCounter_t & LocalNumPerLevel )

inherited

Definition at line 87 of file AmrParticleBase.hpp.

References LocalNumPerLevel_m.

◆ setLorentzFactor()

template<class PLayout>

void AmrParticleBase< PLayout >::setLorentzFactor ( const Vector_t & lorentzFactor )

inherited

Definition at line 343 of file AmrParticleBase.hpp.

References lorentzFactor_m.

◆ setTotalNum()

template<class PLayout>

void IpplParticleBase< PLayout >::setTotalNum ( size_t n )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 199 of file IpplParticleBase.h.

◆ setup()

template<class PLayout>

void IpplParticleBase< PLayout >::setup ( )

privateinherited

Definition at line 49 of file IpplParticleBase.hpp.

References addAttribute(), IpplInfo::Comm, DestroyNum, GhostNum, ID, AbstractParticle< PLayout::Position_t, PLayout::Dimension >::ID_p, INCIPPLSTAT, LocalNum, NextID, R, AbstractParticle< PLayout::Position_t, PLayout::Dimension >::R_p, and TotalNum.

Referenced by initialize(), and IpplParticleBase< Layout_t >::IpplParticleBase().

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◆ setUpdateFlag()

template<class PLayout>

void IpplParticleBase< PLayout >::setUpdateFlag	(	UpdateFlags	f,
		bool	val )

inlinevirtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 222 of file IpplParticleBase.h.

◆ singleInitNode()

template<class PLayout>

bool IpplParticleBase< PLayout >::singleInitNode ( ) const

virtualinherited

Implements AbstractParticle< PLayout::Position_t, PLayout::Dimension >.

Definition at line 78 of file IpplParticleBase.hpp.

References IpplInfo::Comm.

◆ sort() [1/2]

template<class PLayout>

void AmrParticleBase< PLayout >::sort ( )

inherited

Definition at line 215 of file AmrParticleBase.hpp.

References IpplParticleBase< PLayout >::getLocalNum(), IpplParticleBase< PLayout >::LocalNum, sort(), sortParticlesTimer_m, IpplTimings::startTimer(), and IpplTimings::stopTimer().

Referenced by sort(), update(), and update().

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◆ sort() [2/2]

template<class PLayout>

void AmrParticleBase< PLayout >::sort ( SortList_t & sortlist )

inherited

Definition at line 244 of file AmrParticleBase.hpp.

References begin(), and end().

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◆ update() [1/3]

template<class PLayout>

void AmrParticleBase< PLayout >::update ( )

virtualinherited

Reimplemented from IpplParticleBase< PLayout >.

Definition at line 166 of file AmrParticleBase.hpp.

Referenced by AmrBoxLib::computeSelfFields_cycl(), AmrBoxLib::computeSelfFields_cycl(), AmrBoxLib::postRegrid_m(), AmrBoxLib::tagForChargeDensity_m(), AmrBoxLib::tagForMaxNumParticles_m(), AmrBoxLib::tagForMinNumParticles_m(), and AmrBoxLib::tagForMomenta_m().

◆ update() [2/3]

template<class PLayout>

void AmrParticleBase< PLayout >::update ( const ParticleAttrib< char > & canSwap )

virtualinherited

Reimplemented from IpplParticleBase< PLayout >.

Definition at line 194 of file AmrParticleBase.hpp.

References IpplParticleBase< PLayout >::getLayout(), INCIPPLSTAT, IpplParticleBase< PLayout >::Layout, PAssert, sort(), IpplTimings::startTimer(), IpplTimings::stopTimer(), and updateParticlesTimer_m.

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◆ update() [3/3]

template<class PLayout>

void AmrParticleBase< PLayout >::update	(	int	lev_min,
		int	lev_max,
		bool	isRegrid = false )

inherited

There's is NO check performed if lev_min <= lev_max and lev_min >= 0.

Parameters

lev_min	is the start level to update
lev_max	is the last level to update
isRegrid	is true if we are updating the grids (default: false)

Definition at line 173 of file AmrParticleBase.hpp.

References IpplParticleBase< PLayout >::getLayout(), INCIPPLSTAT, IpplParticleBase< PLayout >::Layout, PAssert, sort(), IpplTimings::startTimer(), IpplTimings::stopTimer(), and updateParticlesTimer_m.

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◆ updateConnection()

bool DataSource::updateConnection ( DataConnect * dataconn = 0 )

inherited

Definition at line 176 of file DataSource.cpp.

References a, and ConnectionList.

◆ writeMsgBuffer()

template<class PLayout>

size_t IpplParticleBase< PLayout >::writeMsgBuffer	(	MsgBuffer *&	msgbuf,
		const std::vector< size_t > &	list )

inherited

Definition at line 275 of file IpplParticleBase.hpp.

◆ writeMsgBufferWithOffsets()

template<class PLayout>

template<class O>

size_t IpplParticleBase< PLayout >::writeMsgBufferWithOffsets	(	MsgBuffer *&	msgbuf,
		const std::vector< size_t > &	list,
		const std::vector< O > &	offset )