FM1DDynamic_fast.cpp

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#include "Fields/FM1DDynamic_fast.h"
#include "Fields/Fieldmap.hpp"
#include "Physics/Physics.h"
#include "Physics/Units.h"
#include "Utilities/GeneralClassicException.h"
#include "Utilities/Util.h"
 
#include "gsl/gsl_fft_real.h"
 
#include <fstream>
#include <ios>
 
FM1DDynamic_fast::FM1DDynamic_fast(std::string aFilename) : Fieldmap(aFilename), accuracy_m(0) {
    Type          = T1DDynamic;
    onAxisField_m = nullptr;
 
    std::ifstream fieldFile(Filename_m.c_str());
    if (fieldFile.good()) {
        bool parsingPassed = readFileHeader(fieldFile);
        parsingPassed      = checkFileData(fieldFile, parsingPassed);
        fieldFile.close();
 
        if (!parsingPassed) {
            disableFieldmapWarning();
            zEnd_m = zBegin_m - 1.0e-3;
        } else
            convertHeaderData();
 
        deltaZ_m = (zEnd_m - zBegin_m) / (numberOfGridPoints_m - 1);
        length_m = 2.0 * numberOfGridPoints_m * deltaZ_m;
 
    } else {
        noFieldmapWarning();
        zBegin_m = 0.0;
        zEnd_m   = -1.0e-3;
    }
}
 
FM1DDynamic_fast::~FM1DDynamic_fast() {
    freeMap();
}
 
void FM1DDynamic_fast::readMap() {
    if (onAxisField_m == nullptr) {
        std::ifstream fieldFile(Filename_m.c_str());
        stripFileHeader(fieldFile);
 
        onAxisField_m = new double[numberOfGridPoints_m];
        double maxEz  = readFileData(fieldFile, onAxisField_m);
        fieldFile.close();
 
        std::vector<double> fourierCoefs = computeFourierCoefficients(onAxisField_m);
        normalizeField(maxEz, fourierCoefs);
 
        double* onAxisFieldP   = new double[numberOfGridPoints_m];
        double* onAxisFieldPP  = new double[numberOfGridPoints_m];
        double* onAxisFieldPPP = new double[numberOfGridPoints_m];
        computeFieldDerivatives(fourierCoefs, onAxisFieldP, onAxisFieldPP, onAxisFieldPPP);
        computeInterpolationVectors(onAxisFieldP, onAxisFieldPP, onAxisFieldPPP);
 
        prepareForMapCheck(fourierCoefs);
 
        delete[] onAxisFieldP;
        delete[] onAxisFieldPP;
        delete[] onAxisFieldPPP;
 
        *ippl::Info << typeset_msg("Read in fieldmap '" + Filename_m + "'", "info") << endl;
    }
}
 
void FM1DDynamic_fast::freeMap() {
    if (onAxisField_m != nullptr) {
        delete[] onAxisField_m;
        onAxisField_m = nullptr;
 
        gsl_spline_free(onAxisFieldInterpolants_m);
        gsl_spline_free(onAxisFieldPInterpolants_m);
        gsl_spline_free(onAxisFieldPPInterpolants_m);
        gsl_spline_free(onAxisFieldPPPInterpolants_m);
        gsl_interp_accel_free(onAxisFieldAccel_m);
        gsl_interp_accel_free(onAxisFieldPAccel_m);
        gsl_interp_accel_free(onAxisFieldPPAccel_m);
        gsl_interp_accel_free(onAxisFieldPPPAccel_m);
 
        *ippl::Info << level3 << typeset_msg("freed fieldmap '" + Filename_m + "'", "info") << endl;
    }
}
 
bool FM1DDynamic_fast::getFieldstrength(
    const Vector_t<double, 3>& R, Vector_t<double, 3>& E, Vector_t<double, 3>& B) const {
    std::vector<double> fieldComponents;
    computeFieldOnAxis(R(2) - zBegin_m, fieldComponents);
    computeFieldOffAxis(R, E, B, fieldComponents);
 
    return false;
}
 
bool FM1DDynamic_fast::getFieldDerivative(
    const Vector_t<double, 3>& R, Vector_t<double, 3>& E, Vector_t<double, 3>& /*B*/,
    const DiffDirection& /*dir*/) const {
    E(2) += gsl_spline_eval(onAxisFieldPInterpolants_m, R(2) - zBegin_m, onAxisFieldPAccel_m);
 
    return false;
}
 
void FM1DDynamic_fast::getFieldDimensions(double& zBegin, double& zEnd) const {
    zBegin = zBegin_m;
    zEnd   = zEnd_m;
}
 
void FM1DDynamic_fast::getFieldDimensions(
    double& /*xIni*/, double& /*xFinal*/, double& /*yIni*/, double& /*yFinal*/, double& /*zIni*/,
    double& /*zFinal*/) const {
}
 
void FM1DDynamic_fast::swap() {
}
 
void FM1DDynamic_fast::getInfo(Inform* msg) {
    (*msg) << Filename_m << " (1D dynamic); zini= " << zBegin_m << " m; zfinal= " << zEnd_m << " m;"
           << endl;
}
 
double FM1DDynamic_fast::getFrequency() const {
    return frequency_m;
}
 
void FM1DDynamic_fast::setFrequency(double freq) {
    frequency_m = freq;
}
 
void FM1DDynamic_fast::getOnaxisEz(std::vector<std::pair<double, double>>& eZ) {
    eZ.resize(numberOfGridPoints_m);
    std::ifstream fieldFile(Filename_m.c_str());
    stripFileHeader(fieldFile);
    double maxEz = readFileData(fieldFile, eZ);
    fieldFile.close();
    scaleField(maxEz, eZ);
}
 
bool FM1DDynamic_fast::checkFileData(std::ifstream& fieldFile, bool parsingPassed) {
    double tempDouble;
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex)
        parsingPassed = parsingPassed && interpretLine<double>(fieldFile, tempDouble);
 
    return parsingPassed && interpreteEOF(fieldFile);
}
 
void FM1DDynamic_fast::computeFieldDerivatives(
    std::vector<double> fourierCoefs, double onAxisFieldP[], double onAxisFieldPP[],
    double onAxisFieldPPP[]) {
    for (unsigned int zStepIndex = 0; zStepIndex < numberOfGridPoints_m; ++zStepIndex) {
        double z                   = deltaZ_m * zStepIndex;
        double kz                  = Physics::two_pi * z / length_m + Physics::pi;
        onAxisFieldP[zStepIndex]   = 0.0;
        onAxisFieldPP[zStepIndex]  = 0.0;
        onAxisFieldPPP[zStepIndex] = 0.0;
 
        int coefIndex = 1;
        for (unsigned int n = 1; n < accuracy_m; ++n) {
            double kn     = n * Physics::two_pi / length_m;
            double coskzn = cos(kz * n);
            double sinkzn = sin(kz * n);
 
            onAxisFieldP[zStepIndex] +=
                kn
                * (-fourierCoefs.at(coefIndex) * sinkzn - fourierCoefs.at(coefIndex + 1) * coskzn);
 
            double derivCoeff = pow(kn, 2.0);
            onAxisFieldPP[zStepIndex] +=
                derivCoeff
                * (-fourierCoefs.at(coefIndex) * coskzn + fourierCoefs.at(coefIndex + 1) * sinkzn);
            derivCoeff *= kn;
            onAxisFieldPPP[zStepIndex] +=
                derivCoeff
                * (fourierCoefs.at(coefIndex) * sinkzn + fourierCoefs.at(coefIndex + 1) * coskzn);
 
            coefIndex += 2;
        }
    }
}
 
void FM1DDynamic_fast::computeFieldOffAxis(
    const Vector_t<double, 3>& R, Vector_t<double, 3>& E, Vector_t<double, 3>& B,
    std::vector<double> fieldComponents) const {
    double radiusSq = pow(R(0), 2.0) + pow(R(1), 2.0);
    double transverseEFactor =
        (fieldComponents.at(1) * (0.5 - radiusSq * twoPiOverLambdaSq_m / 16.0)
         - radiusSq * fieldComponents.at(3) / 16.0);
    double transverseBFactor =
        ((fieldComponents.at(0) * (0.5 - radiusSq * twoPiOverLambdaSq_m / 16.0)
          - radiusSq * fieldComponents.at(2) / 16.0)
         * twoPiOverLambdaSq_m / frequency_m);
 
    E(0) += -R(0) * transverseEFactor;
    E(1) += -R(1) * transverseEFactor;
    E(2) +=
        (fieldComponents.at(0) * (1.0 - radiusSq * twoPiOverLambdaSq_m / 4.0)
         - radiusSq * fieldComponents.at(2) / 4.0);
 
    B(0) += -R(1) * transverseBFactor;
    B(1) += R(0) * transverseBFactor;
}
 
void FM1DDynamic_fast::computeFieldOnAxis(double z, std::vector<double>& fieldComponents) const {
    fieldComponents.push_back(gsl_spline_eval(onAxisFieldInterpolants_m, z, onAxisFieldAccel_m));
    fieldComponents.push_back(gsl_spline_eval(onAxisFieldPInterpolants_m, z, onAxisFieldPAccel_m));
    fieldComponents.push_back(
        gsl_spline_eval(onAxisFieldPPInterpolants_m, z, onAxisFieldPPAccel_m));
    fieldComponents.push_back(
        gsl_spline_eval(onAxisFieldPPPInterpolants_m, z, onAxisFieldPPPAccel_m));
}
 
std::vector<double> FM1DDynamic_fast::computeFourierCoefficients(double fieldData[]) {
    const unsigned int totalSize      = 2 * numberOfGridPoints_m - 1;
    gsl_fft_real_wavetable* waveTable = gsl_fft_real_wavetable_alloc(totalSize);
    gsl_fft_real_workspace* workSpace = gsl_fft_real_workspace_alloc(totalSize);
 
    // Reflect field about minimum z value to ensure that it is periodic.
    double* fieldDataReflected = new double[totalSize];
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex) {
        fieldDataReflected[numberOfGridPoints_m - 1 + dataIndex] = fieldData[dataIndex];
        if (dataIndex != 0)
            fieldDataReflected[numberOfGridPoints_m - 1 - dataIndex] = fieldData[dataIndex];
    }
 
    gsl_fft_real_transform(fieldDataReflected, 1, totalSize, waveTable, workSpace);
 
    std::vector<double> fourierCoefs;
    fourierCoefs.push_back(fieldDataReflected[0] / totalSize);
    for (unsigned int coefIndex = 1; coefIndex < 2 * accuracy_m - 1; ++coefIndex)
        fourierCoefs.push_back(2.0 * fieldDataReflected[coefIndex] / totalSize);
 
    delete[] fieldDataReflected;
    gsl_fft_real_workspace_free(workSpace);
    gsl_fft_real_wavetable_free(waveTable);
 
    return fourierCoefs;
}
 
void FM1DDynamic_fast::computeInterpolationVectors(
    double onAxisFieldP[], double onAxisFieldPP[], double onAxisFieldPPP[]) {
    onAxisFieldInterpolants_m    = gsl_spline_alloc(gsl_interp_cspline, numberOfGridPoints_m);
    onAxisFieldPInterpolants_m   = gsl_spline_alloc(gsl_interp_cspline, numberOfGridPoints_m);
    onAxisFieldPPInterpolants_m  = gsl_spline_alloc(gsl_interp_cspline, numberOfGridPoints_m);
    onAxisFieldPPPInterpolants_m = gsl_spline_alloc(gsl_interp_cspline, numberOfGridPoints_m);
 
    double* z = new double[numberOfGridPoints_m];
    for (unsigned int zStepIndex = 0; zStepIndex < numberOfGridPoints_m; ++zStepIndex)
        z[zStepIndex] = deltaZ_m * zStepIndex;
    gsl_spline_init(onAxisFieldInterpolants_m, z, onAxisField_m, numberOfGridPoints_m);
    gsl_spline_init(onAxisFieldPInterpolants_m, z, onAxisFieldP, numberOfGridPoints_m);
    gsl_spline_init(onAxisFieldPPInterpolants_m, z, onAxisFieldPP, numberOfGridPoints_m);
    gsl_spline_init(onAxisFieldPPPInterpolants_m, z, onAxisFieldPPP, numberOfGridPoints_m);
 
    onAxisFieldAccel_m    = gsl_interp_accel_alloc();
    onAxisFieldPAccel_m   = gsl_interp_accel_alloc();
    onAxisFieldPPAccel_m  = gsl_interp_accel_alloc();
    onAxisFieldPPPAccel_m = gsl_interp_accel_alloc();
 
    delete[] z;
}
 
void FM1DDynamic_fast::convertHeaderData() {
    // Convert to angular frequency in Hz.
    frequency_m *= Physics::two_pi * Units::MHz2Hz;
 
    // Convert to m.
    rBegin_m *= Units::cm2m;
    rEnd_m *= Units::cm2m;
    zBegin_m *= Units::cm2m;
    zEnd_m *= Units::cm2m;
 
    twoPiOverLambdaSq_m = pow(frequency_m / Physics::c, 2.0);
}
 
void FM1DDynamic_fast::normalizeField(double maxEz, std::vector<double>& fourierCoefs) {
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex)
        onAxisField_m[dataIndex] /= (maxEz * Units::Vpm2MVpm);
 
    for (std::vector<double>::iterator fourierIterator = fourierCoefs.begin();
         fourierIterator < fourierCoefs.end(); ++fourierIterator)
        *fourierIterator /= (maxEz * Units::Vpm2MVpm);
}
 
double FM1DDynamic_fast::readFileData(std::ifstream& fieldFile, double fieldData[]) {
    double maxEz = 0.0;
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex) {
        interpretLine<double>(fieldFile, fieldData[dataIndex]);
        if (std::abs(fieldData[dataIndex]) > maxEz)
            maxEz = std::abs(fieldData[dataIndex]);
    }
 
    if (!normalize_m)
        maxEz = 1.0;
 
    return maxEz;
}
 
double FM1DDynamic_fast::readFileData(
    std::ifstream& fieldFile, std::vector<std::pair<double, double>>& eZ) {
    double maxEz  = 0.0;
    double deltaZ = (zEnd_m - zBegin_m) / (numberOfGridPoints_m - 1);
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex) {
        eZ.at(dataIndex).first = deltaZ * dataIndex;
        interpretLine<double>(fieldFile, eZ.at(dataIndex).second);
        if (std::abs(eZ.at(dataIndex).second) > maxEz)
            maxEz = std::abs(eZ.at(dataIndex).second);
    }
 
    if (!normalize_m)
        maxEz = 1.0;
 
    return maxEz;
}
 
bool FM1DDynamic_fast::readFileHeader(std::ifstream& fieldFile) {
    std::string tempString;
    int tempInt;
 
    bool parsingPassed = true;
    try {
        parsingPassed = interpretLine<std::string, unsigned int>(fieldFile, tempString, accuracy_m);
    } catch (GeneralClassicException& e) {
        parsingPassed = interpretLine<std::string, unsigned int, std::string>(
            fieldFile, tempString, accuracy_m, tempString);
 
        tempString = Util::toUpper(tempString);
        if (tempString != "TRUE" && tempString != "FALSE")
            throw GeneralClassicException(
                "FM1DDynamic_fast::readFileHeader",
                "The third string on the first line of 1D field "
                "maps has to be either TRUE or FALSE");
 
        normalize_m = (tempString == "TRUE");
    }
    parsingPassed = parsingPassed
                    && interpretLine<double, double, unsigned int>(
                        fieldFile, zBegin_m, zEnd_m, numberOfGridPoints_m);
    parsingPassed = parsingPassed && interpretLine<double>(fieldFile, frequency_m);
    parsingPassed =
        parsingPassed && interpretLine<double, double, int>(fieldFile, rBegin_m, rEnd_m, tempInt);
 
    ++numberOfGridPoints_m;
 
    if (accuracy_m > numberOfGridPoints_m)
        accuracy_m = numberOfGridPoints_m;
 
    return parsingPassed;
}
 
void FM1DDynamic_fast::scaleField(double maxEz, std::vector<std::pair<double, double>>& eZ) {
    if (!normalize_m)
        return;
 
    for (unsigned int dataIndex = 0; dataIndex < numberOfGridPoints_m; ++dataIndex)
        eZ.at(dataIndex).second /= maxEz;
}
 
void FM1DDynamic_fast::stripFileHeader(std::ifstream& fieldFile) {
    std::string tempString;
 
    getLine(fieldFile, tempString);
    getLine(fieldFile, tempString);
    getLine(fieldFile, tempString);
    getLine(fieldFile, tempString);
}
 
void FM1DDynamic_fast::prepareForMapCheck(std::vector<double>& fourierCoefs) {
    std::vector<double> zSampling(numberOfGridPoints_m);
    for (unsigned int zStepIndex = 0; zStepIndex < numberOfGridPoints_m; ++zStepIndex)
        zSampling[zStepIndex] = deltaZ_m * zStepIndex;
 
    checkMap(
        accuracy_m, length_m, zSampling, fourierCoefs, onAxisFieldInterpolants_m,
        onAxisFieldAccel_m);
}